X-ray Structure Analysis Online
Online ISSN : 1883-3578
ISSN-L : 1883-3578
Volume 32
Displaying 1-26 of 26 articles from this issue
Part 1
Part 2
  • Kanji KUBO, Taisuke MATSUMOTO, Haruko TAKECHI
    2016 Volume 32 Pages 3-4
    Published: 2016
    Released on J-STAGE: February 15, 2016
    JOURNAL FREE ACCESS
    Supplementary material
    The structure of 3-bromo-7-(dimethylamino)-4-methylcoumarin (1) was determined by X-ray crystallography. It crystallizes in the space group P21/n (#14) with cell parameters a = 9.000(3)Å, b = 11.561(3)Å, c = 10.591(3)Å, β = 96.5568(14)°, Z = 4, and V = 1094.8(5)Å3. The molecule is almost planar. Intermolecular C=O…Br, C-H…O, C-H…π, and π…π interactions were observed in the crystal lattice.
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  • Ryoji MITSUHASHI, Masahiro MIKURIYA
    2016 Volume 32 Pages 5-6
    Published: 2016
    Released on J-STAGE: February 15, 2016
    JOURNAL FREE ACCESS
    Supplementary material
    The title compound, potassium ethylenediaminetetraacetatocobaltate(III) dihydrate, K[Co(edta)]·2H2O, was prepared. The crystal structure was determined by the single-crystal X-ray diffraction method at 293 K. It crystallizes in the orthorhombic space group P212121 with a = 6.432(3)Å, b = 10.098(5)Å, c = 22.740(11)Å, V = 1477.0(12)Å3, Dx = 1.899 g/cm3, and Z = 4. The R1 [I > 2σ(I)] and wR2 (all data) values are 0.0283 and 0.0722, respectively, for all 3416 independent reflections. The cobalt atom is coordinated by two ethylenediamine-nitrogen and four glycinato-oxygen atoms in an octahedral geometry, whereas the potassium ion is coordinated by four glycinato-oxygen and two water-oxygen atoms in a distorted octahedron.
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Part 3
  • Hiromasa NAGASE, Masaru KOBAYASHI, Haruhisa UEDA, Takayuki FURUISHI, M ...
    2016 Volume 32 Pages 7-9
    Published: March 10, 2016
    Released on J-STAGE: March 10, 2016
    JOURNAL FREE ACCESS
    Supplementary material
    The crystal structure of epalrestat dimethanol-solvate (C15H13NO3S2·2CH3OH) was determined by X-ray crystallography. The crystal is a pseudopolymorphic form of the previously reported monomethanol solvate. The compound crystallized in a monoclinic system, and was characterized as follows: P1, a = 7.8868(2)Å, b = 8.1577(3)Å, c = 16.1069(5)Å, α = 85.5626(19)°, β = 77.790(2)°, γ = 67.5381(18)°, Z = 2, V = 936.00(5)Å3. The pattern of the hydrogen bonds is designated by the graph-set R66(16), composed of two epalrestat and four methanol molecules. The planarity of the epalrestat molecules is lower than that of all other reported polymorphic forms of epalrestat.
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  • Takako YAMAGUCHI, Mitsuru HOSHINO, Kanako MIYACHI, Shinichiro KAMINO, ...
    2016 Volume 32 Pages 9-10
    Published: March 10, 2016
    Released on J-STAGE: March 10, 2016
    JOURNAL FREE ACCESS
    Supplementary material
    The crystal structure of o-carboxyphenylfluorone (denoted OCPF) was determined by X-ray diffraction. This compound crystallizes in triclinic, space group P1 with a = 8.738(2), b = 9.394(2), c = 11.712(2)Å, α = 107.747(3)°, β = 93.435(3)°, γ = 91.447(3)°, V = 913.0(3)Å3, Z = 2. The final R value is 0.0730. The structure takes a dihedral formation consisting of xanthene and benzene carboxylic rings and tautomers. They exist with a zwitterionic character; the dihedral angle between the xanthene and benzene rings systems is 69.22(5)°, and the end of the rings of xanthene are inclined to each other at an angle of about 6.6(1)°.
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Errata
Part 4
  • Misaki ITO, Ryoji MITSUHASHI, Masahiro MIKURIYA, Hiroshi SAKIYAMA
    2016 Volume 32 Pages 13-14
    Published: March 10, 2016
    Released on J-STAGE: April 10, 2016
    JOURNAL FREE ACCESS
    Supplementary material
    The dinuclear zinc(II) complex [Zn2(L)(MeCO2)2]BPh4 [HL = 1:2 condensation product of 2,6-diformyl-4-methylphenol and 2-methoxyethylamine] was prepared, and characterized by a single-crystal X-ray method. The compound crystallized in the monoclinic space group P21/n and Z = 4 with the following cell parameters: a = 14.9150(18)Å, b = 10.2522(12)Å, c = 26.964(4)Å, β = 103.127(3)°, V = 4015.4(9)Å3. The R1 [I > 2σ(I)] and wR2 (all data) values were 0.0351 and 0.0631, respectively, for all 8747 independent reflections. In the complex cation, [Zn2(L)(MeCO2)2]+, two zinc(II) ions are bridged by the phenolate oxygen of the dinucleating ligand, L, and two acetate ions. Both zinc(II) ions have trigonal bipyramidal coordination geometry.
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  • Masahiro MIKURIYA, Masami FUKUTANI, Masataka OMOTE, Daisuke YOSHIOKA, ...
    2016 Volume 32 Pages 15-17
    Published: March 10, 2016
    Released on J-STAGE: April 10, 2016
    JOURNAL FREE ACCESS
    Supplementary material
    A μ-alkoxido-bridged tetranuclear oxidovanadium(IV) complex with 2,6-bis(hydroxymethyl)-4-methylphenol (H3bhmp), [Et3NH]2[(VO)4(Hbhmp)2(EtO)2(SO4)2] (1), was synthesized. The crystal structure was determined by the single-crystal X-ray diffraction method at 90 K. Compound 1 crystallizes in the triclinic space group P1 with a = 10.799(5)Å, b = 11.339(5)Å, c = 11.703(5)Å, α = 109.294(9)°, β = 114.158(7)°, γ = 102.452(9)°, V = 1127.0(8) Å3, Dx = 1.601 g/cm3, and Z = 1. The R1 [I > 2σ(I)] and wR2 (all data) values are 0.0548 and 0.1126, respectively. Compound 1 consists of triethylammonium cations and the di-μ-sulfato-di-μ-ethoxido-di-μ-alkoxido-di-μ-phenoxido-bridged tetranuclear oxidovanadium(IV) complex anion [(VO)4(Hbhmp)2(EtO)2(SO4)2]2− with a parallelogram array of four vanadium atoms.
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Part 5
  • Kanji KUBO, Emi YAMAMOTO, Taisuke MATSUMOTO, Akira MORI
    2016 Volume 32 Pages 19-20
    Published: May 10, 2016
    Released on J-STAGE: May 10, 2016
    JOURNAL FREE ACCESS
    Supplementary material
    The structure of N,N′-bis(4-hexyloxybenzoyl)piperazine was determined by X-ray crystallography. It crystallizes in the space group P21/c (#14) with cell parameters a = 27.234(7)Å, b = 7.496(2)Å, c = 6.820(2)Å, β = 93.80(2)°, Z = 2, and V = 1389.3(6)Å3. The molecule sits on a center of symmetry, such that the two benzoyl groups are in an anti conformation with respect to one another across the piperazine ring. Intermolecular C–H···O and C–H···π interactions were observed in the crystal lattice.
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  • Misaki ITO, Ryoji MITSUHASHI, Masahiro MIKURIYA, Hiroshi SAKIYAMA
    2016 Volume 32 Pages 21-22
    Published: May 10, 2016
    Released on J-STAGE: May 10, 2016
    JOURNAL FREE ACCESS
    Supplementary material
    The zinc(II) complex [Zn(DMF)6](BPh4)2 [hexakis(N,N-dimethylformamide-κO)zinc(II) bis(tetraphenylborate)] was prepared, and characterized by a single-crystal X-ray method. The compound crystallizes in the orthorhombic space group Pca21 and Z = 4 with cell parameters a = 30.231(5)Å, b = 9.2503(14)Å, c = 22.083(3)Å, V = 6175.2(16)Å3. The R1 [I > 2σ(I)] and wR2 (all data) values are 0.0365 and 0.0744, respectively, for all 14167 independent reflections. Six N,N-dimethylformamide (DMF) molecules coordinate to a zinc(II) ion to form a complex cation, [Zn(DMF)6]2+, approximately belonging to an S6 symmetry. The coordination geometry is trigonally compressed along the pseudo-S6 axis. Among the six coordination bonds, one of them is 1.5% (0.031 Å) longer than the average (2.093 Å); another is 2.1% (0.044 Å) shorter than the average.
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  • Jean GUILLON, Luisa RONGA, Mathieu MARCHIVIE, Stéphane MOREAU
    2016 Volume 32 Pages 23-24
    Published: May 10, 2016
    Released on J-STAGE: May 10, 2016
    JOURNAL FREE ACCESS
    Supplementary material
    The X-ray crystal structure of (E)-1-(3,4-methylenedioxy-6-fluorophenyl)-2-nitropropene, a potential antibacterial agent, was established. It crystallizes in the triclinic space group P-1 with cell parameters a = 6.716(1)Å, b = 8.323(2)Å, c = 9.453(2)Å, α = 82.75(2), β = 86.17(1), γ = 68.75(1), V = 488.4(1)Å3 and Z = 2. The crystal structure was refined to final values of R1 = 0.0439 and wR2 = 0.1340. The molecules pack to form a 2D network with head-to-tail short hydrogen bonding like contacts between the methylenedioxy and nitro groups, and between fluor and hydrogen of the aromatic rings of neighbouring molecules.
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Part 6
  • Mari TOYAMA, Satoshi IWATSUKI, Noriharu NAGAO
    2016 Volume 32 Pages 25-26
    Published: June 10, 2016
    Released on J-STAGE: June 10, 2016
    JOURNAL FREE ACCESS
    Supplementary material
    The crystal structure of trans(Cl),cis(S)-dichlorobis(dimethyl sulfoxide-S)(N,N,N′,N′-tetramethylethylenediamine)ruthenium(II) was determined by X-ray crystallography. Single crystals were obtained from the reaction mixture after being left standing at 275 K. The complex crystallized in a monoclinic system, and was characterized as: P21/n, a = 8.616(5), b = 22.925(12), c = 8.991(5)Å, β = 94.415(6)°, Z = 4, V = 1770.7(16)Å3. The R1 and wR2 values were 0.0540 and 0.1359, respectively, for 4045 reflections.
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  • Misaki ITO, Ryoji MITSUHASHI, Masahiro MIKURIYA, Hiroshi SAKIYAMA
    2016 Volume 32 Pages 27-28
    Published: June 10, 2016
    Released on J-STAGE: June 10, 2016
    JOURNAL FREE ACCESS
    Supplementary material
    The magnesium(II) complex [Mg(DMF)6](BPh4)2 [hexakis(N,N-dimethylformamide-κO)magnesium(II)bis(tetraphenylborate)] was prepared, and characterized by single-crystal X-ray method. The compound crystallized in the orthorhombic space group Fddd and Z = 8 with cell parameters a = 17.107(4)Å, b = 20.585(5)Å, c = 35.776(8)Å, V = 12599(5)Å3. The R1 [I > 2σ(I)] and wR2 (all data) values were 0.0583 and 0.1569, respectively, for all 3621 independent reflections. Six N,N-dimethylformamide (DMF) molecules coordinate to a magnesium(II) ion to form a complex cation, [Mg(DMF)6]2+. Crystallographically, the cation seems to belong to the D2 point group as the result of disorder; however, we have concluded that each cation must belong to the C2 point group based on the DFT computation.
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Part 7
  • Masahiro MIKURIYA, Masami FUKUTANI, Masataka OMOTE, Daisuke YOSHIOKA, ...
    2016 Volume 32 Pages 29-32
    Published: July 10, 2016
    Released on J-STAGE: July 10, 2016
    JOURNAL FREE ACCESS
    Supplementary material
    A μ-ethoxido-bridged tetranuclear oxidovanadium(IV) complex with 2,6-bis(hydroxymethyl)-4-methylphenol (H3bhmp), (Et3NH)2[(VO)4(Hbhmp)2(EtO)2(SO4)2]·H2O (1) was synthesized. The crystal structure was determined by the single-crystal X-ray diffraction method at 90 K. Compound 1 crystallizes in the trigonal space group R3 with a = 45.690(8)Å, c = 12.589(2)Å, V = 22758(9)Å3, Dx = 1.451 g/cm3, and Z = 18. The R1 [I > 2σ(I)] and wR2 (all data) values are 0.0614 and 0.1701, respectively. Compound 1 consists of triethylammonium cations and the di-μ-sulfato-di-μ-ethoxido-di-μ-alkoxido-di-μ-phenoxido-bridged tetranuclear oxidovanadium(IV) complex anion [(VO)4(Hbhmp)2(EtO)2(SO4)2]2− with a parallelogram array of four vanadium atoms, and water molecules. The adsorption property was studied for N2 gas with a specific surface area of 1.37 m2 g−1, estimated from an N2 adsorption isotherm.
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  • Long-Chih HWANG, Chung-Lin CHUANG, Chun-Wei SU, Gene-Hsiang LEE
    2016 Volume 32 Pages 33-35
    Published: July 10, 2016
    Released on J-STAGE: July 10, 2016
    JOURNAL FREE ACCESS
    Supplementary material
    The two independent molecules in a single crystal of the title compound, 3-amino-2-benzyl-6-bromo-1,2,4-triazin-5(2H)-one (C10H9BrN4O), was determined by X-ray crystallography. The compound was grown from a protic polar solvent, EtOH, and crystallized in an orthorhombic system. It was characterized as follows: Pbca, a = 23.6829(13)Å, b = 7.5558(4)Å, c = 24.1777(13)Å, V = 4326.4(4)Å3 and Z = 16, resulting in a density, Dcalc, of 1.726 g/cm3. The hydrogen-bonding systems assemble with N-H···O [graph set C11(6)], N-H···N [graph set R22(8)], and N-H···N combine with N-H···O [graph set R44(12)].
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Part 8
  • Eric G. BOWES, Christopher M. VOGELS, Andreas DECKEN, Stephen A. WESTC ...
    2016 Volume 32 Pages 35-36
    Published: August 10, 2016
    Released on J-STAGE: August 10, 2016
    JOURNAL FREE ACCESS
    Supplementary material

    The germanium-boron compound, Ph3GeBpin (pin = 1,2-O2C2Me4), was isolated and the molecular structure was determined by a single crystal X-ray diffraction study at 188 K. The compound crystallizes in an orthorhombic system, space group Pca21 and Z = 8 with cell parameters of a = 16.669(4)Å, b = 9.933(2)Å, c = 26.907(6)Å, V = 4455.0(17)Å3. The R1 [I > 2σ(I)] and wR2 (all data) values are 0.0463 and 0.1196, respectively, for all 9468 independent reflections. The molecular structure analysis reveals the boron atom lies in a roughly trigonal environment that contains one pinacolato group. The asymmetric unit contains two independent molecules and the B–Ge bond distances for the two molecules are 2.073(10) and 2.051(14)Å.

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  • Kanji KUBO, Emi YAMAMOTO, Taisuke MATSUMOTO, Akira MORI
    2016 Volume 32 Pages 37-38
    Published: August 10, 2016
    Released on J-STAGE: August 10, 2016
    JOURNAL FREE ACCESS
    Supplementary material

    The structure of N,N′-bis(5-butoxytropon-2-yl)piperazine was determined by X-ray crystallography. It crystallizes in the space group P1 (#2) with cell parameters a = 6.819(2)Å, b = 9.204(3)Å, c = 10.178(3)Å, α = 108.65(3)°, β = 106.23(2)°, γ = 92.71(3)°, Z = 1, and V = 574.6(3)Å3. The molecule sits on a center of symmetry, such that the two tropone rings are in an anti conformation with respect to one another across the piperazine ring. Intermolecular C–H···O and π···π interactions were observed in the crystal lattice.

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Part 9
  • Tomomi YOSHIDA, Daiki UMEDA, Okky Dwichandra PUTRA, Hidehiro UEKUSA, E ...
    2016 Volume 32 Pages 39-40
    Published: September 10, 2016
    Released on J-STAGE: September 10, 2016
    JOURNAL FREE ACCESS
    Supplementary material

    The structure of the drug-drug multi-component crystal of acedoben–dimepranol (2:1) was determined by single-crystal X-ray crystallography. The compound crystallizes in a monoclinic system with space group P21/n resulting in the following unit cell: a = 7.78174(14)Å, b = 9.71395(18)Å, c = 63.5236(12)Å, β = 92.4271(7)°, Z = 4, V = 4797.53(15)Å3. The final values were R1 = 0.0443 and wR2 = 0.1241. Two acedoben molecules share a hydrogen atom between the COOH and COO– groups forming a mono cationic dimer unit. A counter charge is on NH+ of the dimepranol molecule.

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  • Atsuko MASUYA-SUZUKI, Nobuhiko IKI
    2016 Volume 32 Pages 41-43
    Published: September 10, 2016
    Released on J-STAGE: September 10, 2016
    JOURNAL FREE ACCESS
    Supplementary material

    A square-planar platinum(II) complex, cis-bis(3-tert-butyl-o-diiminobenzosemiquinonato)platinum(II), was synthesized and characterized by single-crystal X-ray diffraction. It crystalizes in the monoclinic space group P21/n and Z = 4 with the following cell parameters: a = 19.748(2)Å, b = 5.9608(7)Å, c = 22.948(3)Å, β = 113.4550(10)°, V = 2478.2(5)Å3. The aromatic ring of the ligand is distorted into two shorter and four longer C–C bonds, which are representative of a o-diiminobenzosemiquinonate radical ligand.

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Part 10
  • Jean GUILLON, Luisa RONGA, Mathieu MARCHIVIE, Vincent LISOWSKI
    2016 Volume 32 Pages 45-46
    Published: October 10, 2016
    Released on J-STAGE: October 10, 2016
    JOURNAL FREE ACCESS
    Supplementary material

    The X-ray crystal structure of 7-amino-4-iodo-3-propyl-1H-isochromen-1-one, a potential inhibitor in the production of amyloid β-peptide, was established. It crystallizes in the monoclinic space group P21/c with cell parameters a = 8.4258(8)Å, b = 25.4258(18)Å, c = 5.5515(6)Å, α = 90, β = 103.301(4), γ = 90, V = 1157.41(19)Å3 and Z = 4. The crystal structure was refined to final values of R1 = 0.0623 and wR2 = 0.1725. An X-ray crystal structure analysis revealed that each molecule features intermolecular N–H···O hydrogen bonds and halogen halogen interactions.

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  • Farahnaz HAMZEHEE, Mehrdad POURAYOUBI, Duane CHOQUESILLO-LAZARTE
    2016 Volume 32 Pages 47-48
    Published: October 10, 2016
    Released on J-STAGE: October 10, 2016
    JOURNAL FREE ACCESS
    Supplementary material

    The crystal structure of diphenyl (2-butylamido) phosphonate has been determined. This crystal belongs to the space group P21/c, and the asymmetric unit of the structure is composed of one complete molecule. The P atom has a distorted tetrahedral configuration with the O–P–O angle as the minimum bond angle at the P atom (97.74(18)°) and one of the O=P–O angles as the maximum angle (115.2(2)°). The oxygen atom of the P–O–C6H5 moiety may be ascribed with the sp2 character, reflected in the P–O–C angles (120.8(3)° and 125.4(3)°). In the crystal structure, the molecules are aggregated through the N–H···O=P hydrogen bond (N1···O1 = 2.971(5)Å) in a one-dimensional chain along the b axis.

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Part 11
Errata
Part 12
  • Masahiro MIKURIYA, Yuko NAKA, Daisuke YOSHIOKA, Makoto HANDA
    2016 Volume 32 Pages 55-58
    Published: December 10, 2016
    Released on J-STAGE: December 10, 2016
    JOURNAL FREE ACCESS
    Supplementary material

    Two dinuclear cobalt(III) complexes with 1,3-bis(5-nitrosalicylideneamino)-2-propanol (H3b5nsalpr) and 1,3-bis(3-nitrosalicylideneamino)-2-propanol (H3b3nsalpr), [Co2(b5nsalpr)2(CH3OH)] and [Co2(b3nsalpr)2(CH3OH)] were synthesized, and the crystal structures were determined by the single-crystal X-ray diffraction method at 90 K. The former crystallizes in the monoclinic space group C2/c with a = 31.560(19)Å, b = 17.013(10)Å, c = 18.888(12)Å, β = 124.334(9)°, V = 8375(9)Å3, Dx = 1.612 g/cm3, and Z = 8. The R1 [I > 2σ(I)] and wR2 (all data) values are 0.0500 and 0.1376, respectively, for all 10031 independent reflections. The latter crystallizes in the triclinic space group P1 with a = 10.816(2)Å, b = 12.803(2)Å, c = 15.812(2)Å, α = 109.245(3), β = 95.243(4)°, γ = 92.303(3)°, V = 2052.8(7)Å3, Dx = 1.613 g/cm3, and Z = 2. The R1 [I > 2σ(I)] and wR2 (all data) values are 0.0469 and 0.1207, respectively, for all 8755 independent reflections. Both of the molecules are dinuclear cobalt(III) complexes with octahedral geometries, having two tridentate chelates of the two Schiff-base ligands for one cobalt atom and didentate and tridentate chelates of the two Schiff-base ligands and monodentate methanol molecule for the other cobalt atom. The spectral and electochemical features are consistent with the crystal structures.

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  • Ryoji MITSUHASHI, Takaaki UEDA, Satoshi HOSOYA, Masahiro MIKURIYA
    2016 Volume 32 Pages 59-60
    Published: December 10, 2016
    Released on J-STAGE: December 10, 2016
    JOURNAL FREE ACCESS
    Supplementary material

    The crystal structure of (R)-2-(4-methylimidazolin-2-yl)phenol was determined by X-ray crystallography. Single crystals were obtained by slow evaporation of a methanol solution. The compound crystallized in the monoclinic space group P21 and Z = 2 with cell parameters a = 6.345(2)Å, b = 9.631(4)Å, c = 7.805(3)Å, V = 440.8(3)Å3. The R1 [I > 2σ(I)] and wR2 (all data) values are 0.0346 and 0.0787, respectively, for all 1436 independent reflections. In the crystal, the compound exists as twitter-ions to form hydrogen-bonds with neighboring molecules. This intermolecular hydrogen-bonding interaction resulted in the construction of a 1D chain structure.

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