Some species of raptors, such as the golden eagle (Aquila chrysaetos) and the mountain hawk-eagle (Spizaetus nipalensis), were recently reduced in population by habitat destruction. Conservation of habitats and genetic diversity for raptors is crucial. However, there is little genetic information on raptors. In this study, 8 microsatellite markers isolated from the peregrine falcon (Falco peregrinus) and gyrfalcon (Falco msticolus) were applied to 6 other raptors. The number of loci detected polymorphisms in the black kite, goshawk, kestrel, marsh harrier, golden eagle and mountain hawk-eagle were 2, 5, 3, 2, 2 and 1, respectively. The mean numbers of alleles per locus detected polymorphisms were 5, 4, 3.3, 2, 2.5 and 2, respectively. The mean expected heterozygosity per locus detected polymorphisms was 0.438, 0.607, 0.423, 0.278, 0.528 and 0.375, respectively. The probability that a randomly chosen individual would match a given genotype for all the loci was 4.24 × 10^<-2>, 3.39 × 10^<-4>, 3.38 × 10^<-2>, 3.14 × 10^<-1>, 9.55 × 10^<-2> and 4.57 × 10^<-1>, respectively. Except for 1 marker, these markers were detected in at least 1 species and showed their usefulness. We examined the efficiency of cross-species amplification among raptors and selected useful microsatellite markers for analyzing genetic polymorphism, which will be valuable for conservation and research in the future.
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