The three-dimensional molecular architecture of Salmonella flagellar motor in the bacterial membrane was examined in situ, by quick-freeze deep-etch replica electron microscopy. The MS ring complex, the FliF gene product, which was over-expressed in E. coli appeared as a drilled bead sitting on a flat disk, projecting toward the periplasm. The cytoplasmic side of the intact flagella consisted of a large bell-shaped structure, which was identified to C ring. In its center, we found a new rod-like structure with a central hole, which we denominated as C rod. This structure may operate as an apparatus to selectively transport the flagellar proteins across the membrane.
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