Seibutsu Butsuri

Volume 43, Issue supplement

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Protein MD trajectory length needed to calculate various physical amounts

S. Metugi, A. Kitao, N. Go

Article type: Article
2003Volume 43Issue supplement Pages S74-
Published: August 25, 2003
Released on J-STAGE: May 01, 2017

DOIhttps://doi.org/10.2142/biophys.43.S74_3

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DXT analysis of chaperonin GroEL fluctuation

T. Miyazaki, Y. Okumura, Y. Kawata, Y.C. Sasaki

Article type: Article
2003Volume 43Issue supplement Pages S74-
Published: August 25, 2003
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DOIhttps://doi.org/10.2142/biophys.43.S74_4

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Protein Zeta

Kazuo Kuwata

Article type: Article
2003Volume 43Issue supplement Pages S75-
Published: August 25, 2003
Released on J-STAGE: May 01, 2017

DOIhttps://doi.org/10.2142/biophys.43.S75_1

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Methodology Developments on solid state NMR for structural characterization of membrane proteins and membrane bound peptides

K. Nishimura, A. Naito

Article type: Article
2003Volume 43Issue supplement Pages S75-
Published: August 25, 2003
Released on J-STAGE: May 01, 2017

DOIhttps://doi.org/10.2142/biophys.43.S75_2

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Development of apparatus detecting mechanochemical interactions of biomolecules

K. Mogami, H. Aoki, B. Lee, T. Hara, Y. Yamagata

Article type: Article
2003Volume 43Issue supplement Pages S75-
Published: August 25, 2003
Released on J-STAGE: May 01, 2017

DOIhttps://doi.org/10.2142/biophys.43.S75_3

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Direct Observation of Specific Interactions between Transcription Factor Protein and DNA

Y. Shimizu, T. Suzuki, R. Koitabashi, M. Fujita, K. Kurihara

Article type: Article
2003Volume 43Issue supplement Pages S75-
Published: August 25, 2003
Released on J-STAGE: May 01, 2017

DOIhttps://doi.org/10.2142/biophys.43.S75_4

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Picking up protein molecules at the very tip of AFM probe

H. Arakawa, T. Yamada, A. Ikai

Article type: Article
2003Volume 43Issue supplement Pages S76-
Published: August 25, 2003
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DOIhttps://doi.org/10.2142/biophys.43.S76_1

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Measurement of VUV circular dichroism spectra by using polarization modulation of undulator radiation

T. Yamada, K. Yagi-Watanabe, M. Tanaka, F. Kaneko, T. Kitada, K. Nakag ...

Article type: Article
2003Volume 43Issue supplement Pages S76-
Published: August 25, 2003
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DOIhttps://doi.org/10.2142/biophys.43.S76_2

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Analysis of Protein Secondary Structure by Vacuum-Ultraviolet Circular Dichroism Spectroscopy

R. Yonehara, K. Matsuo, K. Gekko

Article type: Article
2003Volume 43Issue supplement Pages S76-
Published: August 25, 2003
Released on J-STAGE: May 01, 2017

DOIhttps://doi.org/10.2142/biophys.43.S76_3

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The use of microwave on the enzymatic reaction.

Shokichi Ohuchi, Manabu Umeno, Yasuhiko Ohtsuka, Kazuyasu Konko

Article type: Article
2003Volume 43Issue supplement Pages S76-
Published: August 25, 2003
Released on J-STAGE: May 01, 2017

DOIhttps://doi.org/10.2142/biophys.43.S76_4

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Subnano-second molecular dynamics and peptide foldability

D. Kawamata, T. Aoyama, K. Nishigaki

Article type: Article
2003Volume 43Issue supplement Pages S77-
Published: August 25, 2003
Released on J-STAGE: May 01, 2017

DOIhttps://doi.org/10.2142/biophys.43.S77_1

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The statistical study of protein secondary structure by the parameter of dipeptide unit.

Hiroya Osoegawa, Kazuyasu Konko, Shokichi Ohuchi

Article type: Article
2003Volume 43Issue supplement Pages S77-
Published: August 25, 2003
Released on J-STAGE: May 01, 2017

DOIhttps://doi.org/10.2142/biophys.43.S77_2

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Regulation Mechanism of a Novel Myoglobin with a Metal Binding Loop

S. Taniguchi, M. Ihara, S. Takahashi, Koichiro K., I. Morishima

Article type: Article
2003Volume 43Issue supplement Pages S77-
Published: August 25, 2003
Released on J-STAGE: May 01, 2017

DOIhttps://doi.org/10.2142/biophys.43.S77_3

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Designing β-sheet peptides based on the single layer β-sheet.

H. Sasakawa, T. Nakagawa, H. Okamoto, A. Tamura

Article type: Article
2003Volume 43Issue supplement Pages S77-
Published: August 25, 2003
Released on J-STAGE: May 01, 2017

DOIhttps://doi.org/10.2142/biophys.43.S77_4

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Negative design of foldable proteins : new algorithm

W. Jin, Y. Fujitsuka, G. Chikenji, S. Takada

Article type: Article
2003Volume 43Issue supplement Pages S78-
Published: August 25, 2003
Released on J-STAGE: May 01, 2017

DOIhttps://doi.org/10.2142/biophys.43.S78_1

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Molecular evolution simulation of zinc-binding proteins : Evolution of foldability induced by improvement of a function

S. Fuchigami, Y. Fujitsuka, G. Chikenji, S. Takada

Article type: Article
2003Volume 43Issue supplement Pages S78-
Published: August 25, 2003
Released on J-STAGE: May 01, 2017

DOIhttps://doi.org/10.2142/biophys.43.S78_2

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Hierarchical evolution, folding, and design by pieces

S. HONDA, K. YAMASAKI, Y. SAWADA, H. MORII

Article type: Article
2003Volume 43Issue supplement Pages S78-
Published: August 25, 2003
Released on J-STAGE: May 01, 2017

DOIhttps://doi.org/10.2142/biophys.43.S78_3

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Construction of peptideblock deletion/insertion libraries for the study on structure-function relationship

C. Yoshida, K. Kitamura, K. Nishigaki

Article type: Article
2003Volume 43Issue supplement Pages S78-
Published: August 25, 2003
Released on J-STAGE: May 01, 2017

DOIhttps://doi.org/10.2142/biophys.43.S78_4

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Synthesis of artificial proteins from remixing of native and non-native sequence motifs.

K. Kashiwagi, K. Shiba

Article type: Article
2003Volume 43Issue supplement Pages S79-
Published: August 25, 2003
Released on J-STAGE: May 01, 2017

DOIhttps://doi.org/10.2142/biophys.43.S79_1

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Evolution of an arbitrary sequence in solubility

Y. Ito, I. Igarashi, T. Kawama, I. Urabe, T. Yomo

Article type: Article
2003Volume 43Issue supplement Pages S79-
Published: August 25, 2003
Released on J-STAGE: May 01, 2017

DOIhttps://doi.org/10.2142/biophys.43.S79_2

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High quality Random DNA Libraries for evolutionary protein engineering

S. Ueno, I. Tabuchi, S. Soramoto, K. Hukaisi, H. Arai, Y. Husimi

Article type: Article
2003Volume 43Issue supplement Pages S79-
Published: August 25, 2003
Released on J-STAGE: May 01, 2017

DOIhttps://doi.org/10.2142/biophys.43.S79_3

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Selection based on the folding properties of proteins with ribosome display

T. Matsuura, Andreas Pluckthun

Article type: Article
2003Volume 43Issue supplement Pages S79-
Published: August 25, 2003
Released on J-STAGE: May 01, 2017

DOIhttps://doi.org/10.2142/biophys.43.S79_4

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Evolution of RNaseS binding peptides using in vitro DNA virus

Ichiro TABUCHI

Article type: Article
2003Volume 43Issue supplement Pages S80-
Published: August 25, 2003
Released on J-STAGE: May 01, 2017

DOIhttps://doi.org/10.2142/biophys.43.S80_1

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Evolution of polypeptide with random sequence based on fd-phage infectivity

Y. Hayashi, H. Sakata, Y. Makino, I. Urabe, T. Yomo

Article type: Article
2003Volume 43Issue supplement Pages S80-
Published: August 25, 2003
Released on J-STAGE: May 01, 2017

DOIhttps://doi.org/10.2142/biophys.43.S80_2

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Directed evolution of phenylacetaldehyde reductase

Y. Makino, T. Dairi, N. Itoh

Article type: Article
2003Volume 43Issue supplement Pages S80-
Published: August 25, 2003
Released on J-STAGE: May 01, 2017

DOIhttps://doi.org/10.2142/biophys.43.S80_3

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Can a random polypeptide evolve to be a DNA binding protein?

H. Toyota, T. Nakashima, I. Urabe, T. Yomo

Article type: Article
2003Volume 43Issue supplement Pages S80-
Published: August 25, 2003
Released on J-STAGE: May 01, 2017

DOIhttps://doi.org/10.2142/biophys.43.S80_4

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Development of full-automated macromolecular crystallization/observation system

H. Miyatake, S-H Kim, I. Motegi, H. Matsuzaki, H. Kitahara, A. Higuchi ...

Article type: Article
2003Volume 43Issue supplement Pages S81-
Published: August 25, 2003
Released on J-STAGE: May 01, 2017

DOIhttps://doi.org/10.2142/biophys.43.S81_1

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Development of a device to control the degree of supersaturation on protein crystallization

K. Nakazato, T. Tomo

Article type: Article
2003Volume 43Issue supplement Pages S81-
Published: August 25, 2003
Released on J-STAGE: May 01, 2017

DOIhttps://doi.org/10.2142/biophys.43.S81_2

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An attempt at observing protein synthesis under an optical microscope

Y. Maki, N. Sakaki, K. Adachi, K. Kinosita

Article type: Article
2003Volume 43Issue supplement Pages S81-
Published: August 25, 2003
Released on J-STAGE: May 01, 2017

DOIhttps://doi.org/10.2142/biophys.43.S81_3

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Crystallization of bovine heart Cytochrome c oxidase with newly synthesized detergents.

K. Shinzawa-Itoh, S. Yamamoto, M. Hanada, Y. Tadehara, Y. Sugimura, H. ...

Article type: Article
2003Volume 43Issue supplement Pages S81-
Published: August 25, 2003
Released on J-STAGE: May 01, 2017

DOIhttps://doi.org/10.2142/biophys.43.S81_4

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X-ray structure of cyanide-bound oxygen-reduction site in bovine cytochrome c oxidase

K. Muramoto, M. Hara, S. Aonami, K. Hirata, H. Aoyama, E. Yamashita, T ...

Article type: Article
2003Volume 43Issue supplement Pages S82-
Published: August 25, 2003
Released on J-STAGE: May 01, 2017

DOIhttps://doi.org/10.2142/biophys.43.S82_1

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X-ray structure of Na^+/Ca^<2+>-binding site in bovine cytochrome c oxidase

K. Muramoto, S. Maegawa, S. Aonami, K. Hirata, H. Aoyama, E. Yamashita ...

Article type: Article
2003Volume 43Issue supplement Pages S82-
Published: August 25, 2003
Released on J-STAGE: May 01, 2017

DOIhttps://doi.org/10.2142/biophys.43.S82_2

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Specific lipids bound to bovine heart Cytochrome c oxidase.

H. Terada, A. Yamasaki, K. Shinzawa-Itoh, Y. Tadehara, H. Aoyama, T. S ...

Article type: Article
2003Volume 43Issue supplement Pages S82-
Published: August 25, 2003
Released on J-STAGE: May 01, 2017

DOIhttps://doi.org/10.2142/biophys.43.S82_3

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Oxygen pathway to the oxygen-reduction site in bovine cytochrome c oxidase

K. Muramoto, E. Yamashita, H. Aoyama, K. Shinzaw-Itoh, M. Mochizuki, K ...

Article type: Article
2003Volume 43Issue supplement Pages S82-
Published: August 25, 2003
Released on J-STAGE: May 01, 2017

DOIhttps://doi.org/10.2142/biophys.43.S82_4

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Proton pumping by bovine cytochrome c oxidase : analyses of H-pathway mutants

K. Shimokata, H. Murayama, Y. Katayama, K. Muramoto, S. Yoshikawa, T. ...

Article type: Article
2003Volume 43Issue supplement Pages S83-
Published: August 25, 2003
Released on J-STAGE: May 01, 2017

DOIhttps://doi.org/10.2142/biophys.43.S83_1

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Resonance Raman spectra of a model compound of heme a in cytochrome c oxidase having a formyl peripheral substituent

S. Kuroiwa, S. Kitaoka, H. Fujii, T. Ogura, S. Yoshikawa

Article type: Article
2003Volume 43Issue supplement Pages S83-
Published: August 25, 2003
Released on J-STAGE: May 01, 2017

DOIhttps://doi.org/10.2142/biophys.43.S83_2

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Structure changes of oxidized cytochrome c oxidase by X-ray irradiation.

H. Aoyama, M. Nishihara, K. Muramoto, E. Yamashita, K. Shinzawa-Ito, S ...

Article type: Article
2003Volume 43Issue supplement Pages S83-
Published: August 25, 2003
Released on J-STAGE: May 01, 2017

DOIhttps://doi.org/10.2142/biophys.43.S83_3

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Resonance Raman spectroscopy of mitochondria using an artificial cardiovascular system for enzymatic reaction

T. Takahashi, T. Ogura, S. Yoshikawa

Article type: Article
2003Volume 43Issue supplement Pages S83-
Published: August 25, 2003
Released on J-STAGE: May 01, 2017

DOIhttps://doi.org/10.2142/biophys.43.S83_4

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The properties of blue diode laser and its application to resonance Raman spectra of heme proteins

K. Oda, S. Kuroiwa, T. Ogura

Article type: Article
2003Volume 43Issue supplement Pages S84-
Published: August 25, 2003
Released on J-STAGE: May 01, 2017

DOIhttps://doi.org/10.2142/biophys.43.S84_1

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Structure and function of lamprey hemoglobins and myoglobin

K. Imai, H. Hori, Y. Yazawa, S. Okouchi

Article type: Article
2003Volume 43Issue supplement Pages S84-
Published: August 25, 2003
Released on J-STAGE: May 01, 2017

DOIhttps://doi.org/10.2142/biophys.43.S84_2

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High field and muli-frequency EPR in single crystals of sperm whale metmyoglobin

Y. Miyajima, H. Yashiro, T. Kashiwagi, M. Hagiwara, H. Hori

Article type: Article
2003Volume 43Issue supplement Pages S84-
Published: August 25, 2003
Released on J-STAGE: May 01, 2017

DOIhttps://doi.org/10.2142/biophys.43.S84_3

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Dynamical spectra of iron in myoglobin by synchrotron radiation nuclear resonant inelastic scattering

T. Harami, G. Miyazaki, M. Seto, T. Mitsui, S. Kitao, Y. Kobayashi

Article type: Article
2003Volume 43Issue supplement Pages S84-
Published: August 25, 2003
Released on J-STAGE: May 01, 2017

DOIhttps://doi.org/10.2142/biophys.43.S84_4

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Changes of C-O stretching frequency upon the R to T transition of hemoglobin

I. Hatanaka, H. Hori, G. Miyazaki

Article type: Article
2003Volume 43Issue supplement Pages S85-
Published: August 25, 2003
Released on J-STAGE: May 01, 2017

DOIhttps://doi.org/10.2142/biophys.43.S85_1

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Environment of the distal heme pocket in human neuroglobin

T. Uno, T. Ryu, H. Tsutsumi, K. Kiyota, Y. Tomisugi, Y. Ishikawa

Article type: Article
2003Volume 43Issue supplement Pages S85-
Published: August 25, 2003
Released on J-STAGE: May 01, 2017

DOIhttps://doi.org/10.2142/biophys.43.S85_2

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Resonance Raman Study of the reaction site of Flavohemoglobin

M. Mukai, Syun-Ru Yeh, Denis Rousseau

Article type: Article
2003Volume 43Issue supplement Pages S85-
Published: August 25, 2003
Released on J-STAGE: May 01, 2017

DOIhttps://doi.org/10.2142/biophys.43.S85_3

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In vitro formation of thioether bond in the mixture of heme and apocytochrome c

E. Chatani, R. Hayashi, S. Sano

Article type: Article
2003Volume 43Issue supplement Pages S85-
Published: August 25, 2003
Released on J-STAGE: May 01, 2017

DOIhttps://doi.org/10.2142/biophys.43.S85_4

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cDNA cloning of Zea mays cytochrome b561 and its expression

T. Takigami, N. Nakanishi, T. Hase, M. Tsubaki

Article type: Article
2003Volume 43Issue supplement Pages S86-
Published: August 25, 2003
Released on J-STAGE: May 01, 2017

DOIhttps://doi.org/10.2142/biophys.43.S86_1

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Role of the amino acid residues in the exogeneous ligand binding to an NO carrier protein, NP4.

T. Uno, Y. Hamabe, Y. Moriyama, Y. Tomisugi, Y. Ishikawa

Article type: Article
2003Volume 43Issue supplement Pages S86-
Published: August 25, 2003
Released on J-STAGE: May 01, 2017

DOIhttps://doi.org/10.2142/biophys.43.S86_2

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The role of heme proximate amino acids in the substrate binding to IDO.

T. Uno, T. Hosokawa, A. Matsuura, R. Tsumoto, Y. Tomisugi, Y. Ishikawa

Article type: Article
2003Volume 43Issue supplement Pages S86-
Published: August 25, 2003
Released on J-STAGE: May 01, 2017

DOIhttps://doi.org/10.2142/biophys.43.S86_3

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Elucidation of the mechanism for preventing the product inhibition by photolysis of CO-heme-heme oxygenase

M. Sugishima, H. Sakamoto, M. Noguchi, K. Fukuyama

Article type: Article
2003Volume 43Issue supplement Pages S86-
Published: August 25, 2003
Released on J-STAGE: May 01, 2017

DOIhttps://doi.org/10.2142/biophys.43.S86_4

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