The structures of unconjugated or free
N-glycans in stems of soybean seedlings and dry seeds have been identified. The free
N-glycans were extracted from the stems of seedlings or defatted dry seeds. After desalting by two kinds of ion-exchange chromatography and a gel filtration, the free
N-glycans were coupled with 2-aminopyridine. The resulting fluorescence-labeled (PA-)
N-glycans were purified by gel filtration, Con A affinity chromatography, reverse-phase HPLC, and size-fractionation HPLC. The structures of the PA-sugar chains purified were analyzed by the combination of two-dimensional sugar chain mapping, jack bean α-mannosidase digestion, α-1,2-mannosidase digestions, partial acetolysis, and ESI-MS/MS. The free
N-glycan structures found showed that two categories of free
N-glycans occur in the stems of soybean seedlings. One is a high-mannose type structure having one GlcNAc residue at the reducing end (Man
9~5GlcNAc
1, 93%), that would be derived by endo-GM (Kimura, Y.
et al.,
Biochim. Biophys. Acta, 1381, 27-36 (1998)). The other small component is a xylose-containing type one having two GlcNAc residues at the reducing end (Man
3Xyl
1GlcNAc
2, 7%), which would be derived by PNGase-GM (Kimura, Y. and Ohno, A.,
Biosci. Biotechnol. Biochem., 62, 412-418 (1998)). The detailed structural analysis of free glycans showed that high-mannose type free
N-glycans (Man
9~5GlcNAc
1) in the soybean seedlings have a common core structural unit; Manα1- 6(Man1-3)Manα1-6(Manα1-3)Manβ1-4GlcNAc.
Comparing the amount of free
N-glycans in the seedling stems and dry seeds, the amount in the stems of seedlings was much higher than that in the dry seeds; approximately 700 pmol per one stem, 8 pmol in one dry seed. This fact suggested that free
N-glycans in soybean seedlings could be produced by two kinds of
N-glycan releasing enzymes during germination or seedling-development.
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