To analyze the region that determines the specificity of binding of the Tn
3 transposase to the terminal inverted repeat sequences (IR), we first determined the nucleotide sequence of a Tn
3-family transposon, γδ, which is supposed to encode a transposase similar to that of Tn
3. γδ was 5981 bp in length and contained three coding frames: Two were the genes,
tupA and
tnpR, encoding transposase (1002 amino acids) and resolvase/repressor (183 amino acids), respectively, and the third, named
tnpX, encoding a protein (698 amino acids) of unknown function but containing two NTP-binding motifs. Utilizing the
tnpA sequence, we then constructed a series of Tn
3-γδ hybrid genes encoding chimeric proteins in the N-terminal segments of the transposases (amino acid position 1 to 242 of Tn
3 or 1' to 243' of γδ), which has been previously shown to be responsible for specific binding of transposase to IR sequences in Tn
3. Examination of their DNA-binding activities revealed that the subsegment of the N-terminus from amino acid position 1 to 109 determines the specificity of binding to the IR sequences. The third coding frame found in γδ,
tnpX, is located downstream of
tnpR and is expressed from the
tnpR promoter in the absence of the
tnpR gene product, resolvase/repressor, to produce a protein that inhibits the growth of the host cells. Possible roles of this protein are discussed.
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