Nucleotide sequences of 16S rDNA and
rpoB gene of 25 bovine and 6 ovine
Histophilus somni strains were determined to detect subtle differences between the host animal species. The 1465 nucleotide residues of the 16S rDNA exhibited levels of sequence similarities of 99.4% or more. The high sequence similarity of the 16S rDNA of recently described species
H. somni was confirmed in the 31 strains from cattle and sheep. These results suggested that the intra-specific diversity of 16S rDNA was limited in bovine and ovine strains of
H. somni. The specific association of strains was also observed in the 311 bp region of
rpoB gene which sequence similarities were 98.6% or more. However, the phylogenetic tree analysis of the
rpoB gene showed that the ovine strains appeared to form a subgroup recovered in 70% of the bootstrap trees. In the 311 bp region of the ovine strains, a
HincII restriction endonuclease site was detected. The PCR-amplified
rpoB DNA of 46 bovine and 20 ovine
H. somni strains were examined for the digestion with
HincII. As the results, 17 strains of ovine strains were cleaved by the enzyme but none of the bovine strains appeared to possess the restriction site. The restriction enzyme analysis of
rpoB gene may be useful to differentiate ovine strains from bovine strains of
H. somni.
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